WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4h.1 Sequence Name  C52A11.4h.1
Length (nt)  4230   Chromosome Location  II: 10739275-10752420
Chromosome . Primary Identifier  II Chromosome Location . Start  10739275
Chromosome Location . End  10752420 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4h C52A11.4h 4230   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4h.1 10739275 10752420 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66788   84   II: 10739275-10739358 Caenorhabditis elegans
Exon66799   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66808   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66817   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66826   84   II: 10741137-10741220 Caenorhabditis elegans
Exon66835   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66845   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66853   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66861   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66869   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66877   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66886   570   II: 10748528-10749097 Caenorhabditis elegans
Exon66893   75   II: 10749856-10749930 Caenorhabditis elegans
Exon66900   120   II: 10751054-10751173 Caenorhabditis elegans
Exon66907   127   II: 10751222-10751348 Caenorhabditis elegans
Exon66914   99   II: 10751463-10751561 Caenorhabditis elegans
Exon66921   107   II: 10751725-10751831 Caenorhabditis elegans
Exon66928   181   II: 10752126-10752306 Caenorhabditis elegans
Exon66929   65   II: 10752356-10752420 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4h.1 10739275 10752420 -1

1 Sequence

Length
4230

1 Sequence Ontology Term

Identifier Name Description
transcript