WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4e.1 Sequence Name  C52A11.4e.1
Length (nt)  6555   Chromosome Location  II: 10739275-10766641
Chromosome . Primary Identifier  II Chromosome Location . Start  10739275
Chromosome Location . End  10766641 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4e C52A11.4e 6555   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4e.1 10739275 10766641 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

36 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66827   84   II: 10739275-10739358 Caenorhabditis elegans
Exon66833   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66842   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66851   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66862   84   II: 10741137-10741220 Caenorhabditis elegans
Exon66869   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66879   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66887   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66895   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66903   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66911   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66920   570   II: 10748528-10749097 Caenorhabditis elegans
Exon66927   75   II: 10749856-10749930 Caenorhabditis elegans
Exon66934   120   II: 10751054-10751173 Caenorhabditis elegans
Exon66941   127   II: 10751222-10751348 Caenorhabditis elegans
Exon66948   99   II: 10751463-10751561 Caenorhabditis elegans
Exon66955   107   II: 10751725-10751831 Caenorhabditis elegans
Exon66962   181   II: 10752126-10752306 Caenorhabditis elegans
Exon66970   77   II: 10752356-10752432 Caenorhabditis elegans
Exon66976   57   II: 10753531-10753587 Caenorhabditis elegans
Exon66982   75   II: 10754011-10754085 Caenorhabditis elegans
Exon66988   87   II: 10754430-10754516 Caenorhabditis elegans
Exon66994   85   II: 10756732-10756816 Caenorhabditis elegans
Exon67000   134   II: 10757050-10757183 Caenorhabditis elegans
Exon67007   286   II: 10757494-10757779 Caenorhabditis elegans
Exon67014   521   II: 10757953-10758473 Caenorhabditis elegans
Exon67021   92   II: 10758889-10758980 Caenorhabditis elegans
Exon67029   124   II: 10759359-10759482 Caenorhabditis elegans
Exon67036   146   II: 10759604-10759749 Caenorhabditis elegans
Exon67043   152   II: 10759793-10759944 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4e.1 10739275 10766641 -1

1 Sequence

Length
6555

1 Sequence Ontology Term

Identifier Name Description
transcript