WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4b.1 Sequence Name  C52A11.4b.1
Length (nt)  2549   Chromosome Location  II: 10757462-10772828
Chromosome . Primary Identifier  II Chromosome Location . Start  10757462
Chromosome Location . End  10772828 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4b C52A11.4b 2517   II: 10757479-10757779

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4b.1 10757462 10772828 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66973   318   II: 10757462-10757779 Caenorhabditis elegans
Exon66981   521   II: 10757953-10758473 Caenorhabditis elegans
Exon66988   92   II: 10758889-10758980 Caenorhabditis elegans
Exon66996   124   II: 10759359-10759482 Caenorhabditis elegans
Exon67003   146   II: 10759604-10759749 Caenorhabditis elegans
Exon67010   152   II: 10759793-10759944 Caenorhabditis elegans
Exon67017   179   II: 10760077-10760255 Caenorhabditis elegans
Exon67024   68   II: 10760413-10760480 Caenorhabditis elegans
Exon67031   91   II: 10763265-10763355 Caenorhabditis elegans
Exon67038   75   II: 10763741-10763815 Caenorhabditis elegans
Exon67045   135   II: 10764131-10764265 Caenorhabditis elegans
Exon67054   101   II: 10766636-10766736 Caenorhabditis elegans
Exon67059   152   II: 10767219-10767370 Caenorhabditis elegans
Exon67064   110   II: 10771059-10771168 Caenorhabditis elegans
Exon67069   80   II: 10771750-10771829 Caenorhabditis elegans
Exon67074   46   II: 10771917-10771962 Caenorhabditis elegans
Exon67079   128   II: 10772296-10772423 Caenorhabditis elegans
Exon67083   31   II: 10772798-10772828 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4b.1 10757462 10772828 -1

1 Sequence

Length
2549

1 Sequence Ontology Term

Identifier Name Description
transcript