WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1g.1 Sequence Name  C09D8.1g.1
Length (nt)  4764   Chromosome Location  II: 11005699-11012244
Chromosome . Primary Identifier  II Chromosome Location . Start  11005699
Chromosome Location . End  11012244 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1g C09D8.1g 3744   II: 11006257-11006617

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1g.1 11005699 11012244 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67682   919   II: 11005699-11006617 Caenorhabditis elegans
Exon67689   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67702   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67716   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67730   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67744   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67758   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67772   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67786   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67805   573   II: 11011672-11012244 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1g.1 11005699 11012244 1

1 Sequence

Length
4764

1 Sequence Ontology Term

Identifier Name Description
transcript