WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C09D8.1g Sequence Name  C09D8.1g
Length (nt)  3744   Chromosome Location  II: 11006257-11006617
Chromosome . Primary Identifier  II Chromosome Location . Start  11006257
Chromosome Location . End  11006617
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1g

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE48105 PTP-3, isoform g 141.3 1247 Caenorhabditis elegans
 

Other

13 RNAi

WormBase ID
WBRNAi00068172
WBRNAi00022983
WBRNAi00000644
WBRNAi00040183
WBRNAi00111054
WBRNAi00064606
WBRNAi00022278
WBRNAi00109584
WBRNAi00109195
WBRNAi00111618
WBRNAi00109293
WBRNAi00109487
WBRNAi00109390

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C09D8.1g 11006257 11006617 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:C09D8.1g 11006257 11006617 1
CDS:C09D8.1g 11006751 11006836 1
CDS:C09D8.1g 11007016 11007192 1
CDS:C09D8.1g 11007310 11007825 1
CDS:C09D8.1g 11007889 11008164 1
CDS:C09D8.1g 11009181 11009279 1
CDS:C09D8.1g 11009368 11010986 1
CDS:C09D8.1g 11011040 11011292 1
CDS:C09D8.1g 11011373 11011618 1
CDS:C09D8.1g 11011672 11011782 1

1 Sequence

Length
3744

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C09D8.1g.1 C09D8.1g.1 4764   II: 11005699-11012244