WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C33B4.3c Sequence Name  C33B4.3c
Length (nt)  3423   Chromosome Location  II: 11384925-11385154
Chromosome . Primary Identifier  II Chromosome Location . Start  11384925
Chromosome Location . End  11385154
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C33B4.3c

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE43434 SHN-1, isoform c 125.9 1140 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00082843
WBRNAi00041736
WBRNAi00011515
WBRNAi00029454
WBRNAi00086037
WBRNAi00082844
WBRNAi00086036

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C33B4.3c 11384925 11385154 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006444 shn-1 C33B4.3 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:C33B4.3c 11384925 11385154 -1
CDS:C33B4.3c 11385778 11385931 -1
CDS:C33B4.3c 11386069 11386216 -1
CDS:C33B4.3c 11386701 11387542 -1
CDS:C33B4.3c 11387780 11388102 -1
CDS:C33B4.3c 11388263 11388352 -1
CDS:C33B4.3c 11388610 11388882 -1
CDS:C33B4.3c 11388940 11389281 -1
CDS:C33B4.3c 11389328 11389916 -1
CDS:C33B4.3c 11389987 11390088 -1
CDS:C33B4.3c 11390348 11390617 -1
CDS:C33B4.3c 11390725 11390784 -1

1 Sequence

Length
3423

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C33B4.3c.1 C33B4.3c.1 3866   II: 11384562-11390864