WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D12.3c.2 Sequence Name  C05D12.3c.2
Length (nt)  5226   Chromosome Location  II: 11425267-11432759
Chromosome . Primary Identifier  II Chromosome Location . Start  11425267
Chromosome Location . End  11432759 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D12.3c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014666 C05D12.3 C05D12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D12.3c C05D12.3c 3006   II: 11425281-11425335

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D12.3c.2 11425267 11432759 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69125   69   II: 11425267-11425335 Caenorhabditis elegans
Exon69131   94   II: 11425378-11425471 Caenorhabditis elegans
Exon69137   694   II: 11426375-11427068 Caenorhabditis elegans
Exon69142   204   II: 11427123-11427326 Caenorhabditis elegans
Exon69147   347   II: 11427374-11427720 Caenorhabditis elegans
Exon69152   68   II: 11427769-11427836 Caenorhabditis elegans
Exon69157   536   II: 11428020-11428555 Caenorhabditis elegans
Exon69162   123   II: 11428598-11428720 Caenorhabditis elegans
Exon69167   63   II: 11428769-11428831 Caenorhabditis elegans
Exon69172   181   II: 11428888-11429068 Caenorhabditis elegans
Exon69177   165   II: 11429116-11429280 Caenorhabditis elegans
Exon69182   90   II: 11429326-11429415 Caenorhabditis elegans
Exon69187   213   II: 11429726-11429938 Caenorhabditis elegans
Exon69191   150   II: 11429986-11430135 Caenorhabditis elegans
Exon69197   2229   II: 11430531-11432759 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D12.3c.2 11425267 11432759 1

1 Sequence

Length
5226

1 Sequence Ontology Term

Identifier Name Description
transcript