WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27D12.2c.1 Sequence Name  T27D12.2c.1
Length (nt)  2922   Chromosome Location  II: 11846859-11856461
Chromosome . Primary Identifier  II Chromosome Location . Start  11846859
Chromosome Location . End  11856461 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27D12.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27D12.2c T27D12.2c 2922   II: 11846859-11846974

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2c.1 11846859 11856461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70264   116   II: 11846859-11846974 Caenorhabditis elegans
Exon70268   184   II: 11847031-11847214 Caenorhabditis elegans
Exon70275   108   II: 11847278-11847385 Caenorhabditis elegans
Exon70282   63   II: 11847429-11847491 Caenorhabditis elegans
Exon70292   127   II: 11847722-11847848 Caenorhabditis elegans
Exon70296   45   II: 11847982-11848026 Caenorhabditis elegans
Exon70305   237   II: 11848423-11848659 Caenorhabditis elegans
Exon70312   639   II: 11848714-11849352 Caenorhabditis elegans
Exon70319   102   II: 11849863-11849964 Caenorhabditis elegans
Exon70326   217   II: 11850107-11850323 Caenorhabditis elegans
Exon70333   163   II: 11850367-11850529 Caenorhabditis elegans
Exon70340   134   II: 11850636-11850769 Caenorhabditis elegans
Exon70347   132   II: 11850820-11850951 Caenorhabditis elegans
Exon70354   120   II: 11850998-11851117 Caenorhabditis elegans
Exon70361   149   II: 11851163-11851311 Caenorhabditis elegans
Exon70370   57   II: 11854514-11854570 Caenorhabditis elegans
Exon70373   129   II: 11854615-11854743 Caenorhabditis elegans
Exon70376   200   II: 11856262-11856461 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2c.1 11846859 11856461 -1

1 Sequence

Length
2922

1 Sequence Ontology Term

Identifier Name Description
transcript