WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K12D12.2.1 Sequence Name  K12D12.2.1
Length (nt)  5443   Chromosome Location  II: 11865431-11874788
Chromosome . Primary Identifier  II Chromosome Location . Start  11865431
Chromosome Location . End  11874788 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K12D12.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003789 npp-3 K12D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K12D12.2 K12D12.2 5091   II: 11865688-11865851

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K12D12.2.1 11865431 11874788 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70434   421   II: 11865431-11865851 Caenorhabditis elegans
Exon70435   218   II: 11865907-11866124 Caenorhabditis elegans
Exon70436   140   II: 11866532-11866671 Caenorhabditis elegans
Exon70437   390   II: 11866730-11867119 Caenorhabditis elegans
Exon70438   63   II: 11867183-11867245 Caenorhabditis elegans
Exon70439   90   II: 11868142-11868231 Caenorhabditis elegans
Exon70444   142   II: 11869701-11869842 Caenorhabditis elegans
Exon70445   746   II: 11869904-11870649 Caenorhabditis elegans
Exon70446   305   II: 11870696-11871000 Caenorhabditis elegans
Exon70447   348   II: 11871064-11871411 Caenorhabditis elegans
Exon70448   106   II: 11871847-11871952 Caenorhabditis elegans
Exon70449   1595   II: 11872005-11873599 Caenorhabditis elegans
Exon70450   205   II: 11873754-11873958 Caenorhabditis elegans
Exon70451   92   II: 11874008-11874099 Caenorhabditis elegans
Exon70452   352   II: 11874160-11874511 Caenorhabditis elegans
Exon70453   230   II: 11874559-11874788 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K12D12.2.1 11865431 11874788 -1

1 Sequence

Length
5443

1 Sequence Ontology Term

Identifier Name Description
transcript