WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y17G7B.2d.1 Sequence Name  Y17G7B.2d.1
Length (nt)  2305   Chromosome Location  II: 11980465-11989017
Chromosome . Primary Identifier  II Chromosome Location . Start  11980465
Chromosome Location . End  11989017 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y17G7B.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012458 ash-2 Y17G7B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y17G7B.2d Y17G7B.2d 1728   II: 11980475-11980545

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y17G7B.2d.1 11980465 11989017 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70740   81   II: 11980465-11980545 Caenorhabditis elegans
Exon70743   93   II: 11980628-11980720 Caenorhabditis elegans
Exon70747   331   II: 11980766-11981096 Caenorhabditis elegans
Exon70753   221   II: 11982034-11982254 Caenorhabditis elegans
Exon70756   123   II: 11983001-11983123 Caenorhabditis elegans
Exon70764   263   II: 11984657-11984919 Caenorhabditis elegans
Exon70769   113   II: 11985979-11986091 Caenorhabditis elegans
Exon70774   201   II: 11987020-11987220 Caenorhabditis elegans
Exon70779   91   II: 11987416-11987506 Caenorhabditis elegans
Exon70784   788   II: 11988230-11989017 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y17G7B.2d.1 11980465 11989017 1

1 Sequence

Length
2305

1 Sequence Ontology Term

Identifier Name Description
transcript