WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y46G5A.4 Sequence Name  Y46G5A.4
Length (nt)  6438   Chromosome Location  II: 12727307-12727496
Chromosome . Primary Identifier  II Chromosome Location . Start  12727307
Chromosome Location . End  12727496
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.4

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE21971 SNRP-200 243.8 2145 Caenorhabditis elegans
 

Other

27 RNAi

WormBase ID
WBRNAi00095788
WBRNAi00056692
WBRNAi00072730
WBRNAi00074983
WBRNAi00083718
WBRNAi00083614
WBRNAi00074980
WBRNAi00072729
WBRNAi00072731
WBRNAi00037141
WBRNAi00074984
WBRNAi00080709
WBRNAi00064870
WBRNAi00083807
WBRNAi00074981
WBRNAi00074982
WBRNAi00074985
WBRNAi00074986
WBRNAi00075527
WBRNAi00093912
WBRNAi00074987
WBRNAi00075526
WBRNAi00026712
WBRNAi00080058
WBRNAi00080142
WBRNAi00080675
WBRNAi00083550

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y46G5A.4 12727307 12727496 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012896 snrp-200 Y46G5A.4 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y46G5A.4 12727307 12727496 -1
CDS:Y46G5A.4 12727623 12728385 -1
CDS:Y46G5A.4 12728441 12728669 -1
CDS:Y46G5A.4 12729470 12729630 -1
CDS:Y46G5A.4 12729831 12730241 -1
CDS:Y46G5A.4 12730650 12730959 -1
CDS:Y46G5A.4 12732102 12732491 -1
CDS:Y46G5A.4 12732605 12733780 -1
CDS:Y46G5A.4 12733843 12734250 -1
CDS:Y46G5A.4 12734309 12735446 -1
CDS:Y46G5A.4 12735565 12736387 -1
CDS:Y46G5A.4 12736437 12736875 -1

1 Sequence

Length
6438

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y46G5A.4.1 Y46G5A.4.1 6817   II: 12726963-12736910