WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F1A.3.1 Sequence Name  Y38F1A.3.1
Length (nt)  2988   Chromosome Location  II: 12965546-12978171
Chromosome . Primary Identifier  II Chromosome Location . Start  12965546
Chromosome Location . End  12978171 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F1A.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004232 ptr-18 Y38F1A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F1A.3 Y38F1A.3 2688   II: 12965568-12965689

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F1A.3.1 12965546 12978171 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72509   144   II: 12965546-12965689 Caenorhabditis elegans
Exon72510   75   II: 12966557-12966631 Caenorhabditis elegans
Exon72511   126   II: 12966682-12966807 Caenorhabditis elegans
Exon72519   261   II: 12970734-12970994 Caenorhabditis elegans
Exon72520   97   II: 12971109-12971205 Caenorhabditis elegans
Exon72521   264   II: 12972095-12972358 Caenorhabditis elegans
Exon72522   110   II: 12972866-12972975 Caenorhabditis elegans
Exon72523   792   II: 12973795-12974586 Caenorhabditis elegans
Exon72524   364   II: 12976611-12976974 Caenorhabditis elegans
Exon72525   204   II: 12977026-12977229 Caenorhabditis elegans
Exon72526   551   II: 12977621-12978171 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F1A.3.1 12965546 12978171 1

1 Sequence

Length
2988

1 Sequence Ontology Term

Identifier Name Description
transcript