WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48C3A.5a.1 Sequence Name  Y48C3A.5a.1
Length (nt)  1898   Chromosome Location  II: 13272634-13304224
Chromosome . Primary Identifier  II Chromosome Location . Start  13272634
Chromosome Location . End  13304224 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48C3A.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012989 Y48C3A.5 Y48C3A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48C3A.5a Y48C3A.5a 1764   II: 13272634-13272774

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.5a.1 13272634 13304224 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73076   141   II: 13272634-13272774 Caenorhabditis elegans
Exon73077   125   II: 13278175-13278299 Caenorhabditis elegans
Exon73080   230   II: 13279046-13279275 Caenorhabditis elegans
Exon73083   143   II: 13279626-13279768 Caenorhabditis elegans
Exon73099   99   II: 13299696-13299794 Caenorhabditis elegans
Exon73102   587   II: 13300511-13301097 Caenorhabditis elegans
Exon73108   125   II: 13302234-13302358 Caenorhabditis elegans
Exon73112   94   II: 13302702-13302795 Caenorhabditis elegans
Exon73116   114   II: 13303170-13303283 Caenorhabditis elegans
Exon73123   240   II: 13303985-13304224 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48C3A.5a.1 13272634 13304224 1

1 Sequence

Length
1898

1 Sequence Ontology Term

Identifier Name Description
transcript