Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y48C3A.21b | Y48C3A.21b |
22
 |
II: 13333763-13333784 |
| Transcript:Y48C3A.21a | Y48C3A.21a |
22
|
II: 13333806-13333827 |
Other
10 Allele
| Public Name |
|---|
| gk963801 |
| gk963053 |
| gk962684 |
| gk962526 |
| gk962527 |
| WBVar02014403 |
| tm11010 |
| WBVar02077338 |
| WBVar01642410 |
| WBVar00005878 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00194807 | 13333763 | 13333827 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_13330526..13333762 | 3237 | II: 13330526-13333762 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2. | DESeq2, Fold change > 1.5. | WBPaper00051404:alg-5(ram2)_downregulated_miRNA | |
| miRNA that showed increased expression after 20mM nicotine treatment | Statistical analysis was based on t-test for independent samples via SPSS. The results were further narrowed based on two criteria. Only the genes whose expression changed with a P < 0.05 and a fold change > 0.5, when compared to control, were considered as differentially expressed. Fold change was calculated as 2**(DeltaCt(treatment)-DeltaCt(control))-1. DeltaCt = Ct(miRNA)-Ct(aveMRNA). | WBPaper00042480:20mM_nicotine_upregulated | |
| MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2. | DESeq2, Fold change > 1.5. | WBPaper00051404:alg-5(tm1163)_downregulated_miRNA |