WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Statistical analysis was based on t-test for independent samples via SPSS. The results were further narrowed based on two criteria. Only the genes whose expression changed with a P < 0.05 and a fold change > 0.5, when compared to control, were considered as differentially expressed. Fold change was calculated as 2**(DeltaCt(treatment)-DeltaCt(control))-1. DeltaCt = Ct(miRNA)-Ct(aveMRNA). Description  miRNA that showed increased expression after 20mM nicotine treatment
Primary Identifier  WBPaper00042480:20mM_nicotine_upregulated
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0 Anatomy Terms

31 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00077708 mir-1817 Y37F4.9 Caenorhabditis elegans
WBGene00045328 mir-794 T07D10.7 Caenorhabditis elegans
WBGene00194809 mir-2218.1 W09G3.10 Caenorhabditis elegans
WBGene00194810 mir-2218.2 W09G3.11 Caenorhabditis elegans
WBGene00194808 mir-2216 M106.9 Caenorhabditis elegans
WBGene00003266 mir-38 Y62F5A.5 Caenorhabditis elegans
WBGene00194807 mir-2215 Y48C3A.21 Caenorhabditis elegans
WBGene00003304 mir-76 C44B11.5 Caenorhabditis elegans
WBGene00003318 mir-90 K01F9.1 Caenorhabditis elegans
WBGene00194824 mir-2209.1 Y55F3AM.18 Caenorhabditis elegans
WBGene00003336 mir-242 F36A4.16 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00194805 mir-2210 ZK593.12 Caenorhabditis elegans
WBGene00045330 mir-798 Y64G10A.14 Caenorhabditis elegans
WBGene00077720 mir-1833 Y41E3.214 Caenorhabditis elegans
WBGene00045325 mir-789.1 Y51H4A.34 Caenorhabditis elegans
WBGene00045326 mir-789.2 T28F3.10 Caenorhabditis elegans
WBGene00003349 mir-255 F08F3.11 Caenorhabditis elegans
WBGene00003352 mir-258.1 AC8.8 Caenorhabditis elegans
WBGene00045360 mir-800 R04A9.8 Caenorhabditis elegans
WBGene00194831 mir-2220 Y59E1B.4 Caenorhabditis elegans
WBGene00050924 mir-1018 Y59E1B.3 Caenorhabditis elegans
WBGene00045342 mir-785 Y41G9A.11 Caenorhabditis elegans
WBGene00077721 mir-1022 K10C2.9 Caenorhabditis elegans
WBGene00045359 mir-799 F18E9.9 Caenorhabditis elegans
WBGene00003277 mir-49 F19C6.6 Caenorhabditis elegans
WBGene00003282 mir-54 F09A5.5 Caenorhabditis elegans
WBGene00003275 mir-47 K02B9.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
nicotine WBMol:00001980