WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F11.2a.1 Sequence Name  F54F11.2a.1
Length (nt)  4891   Chromosome Location  II: 13507819-13516478
Chromosome . Primary Identifier  II Chromosome Location . Start  13507819
Chromosome Location . End  13516478 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F11.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010070 nep-17 F54F11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F11.2a F54F11.2a 4770   II: 13507831-13507875

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F11.2a.1 13507819 13516478 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73441   57   II: 13507819-13507875 Caenorhabditis elegans
Exon73442   181   II: 13508560-13508740 Caenorhabditis elegans
Exon73443   88   II: 13508881-13508968 Caenorhabditis elegans
Exon73444   154   II: 13509119-13509272 Caenorhabditis elegans
Exon73446   389   II: 13509479-13509867 Caenorhabditis elegans
Exon73448   225   II: 13509918-13510142 Caenorhabditis elegans
Exon73450   235   II: 13510386-13510620 Caenorhabditis elegans
Exon73452   725   II: 13510677-13511401 Caenorhabditis elegans
Exon73456   476   II: 13511761-13512236 Caenorhabditis elegans
Exon73458   113   II: 13512284-13512396 Caenorhabditis elegans
Exon73460   1273   II: 13513260-13514532 Caenorhabditis elegans
Exon73462   543   II: 13514980-13515522 Caenorhabditis elegans
Exon73464   224   II: 13516000-13516223 Caenorhabditis elegans
Exon73467   208   II: 13516271-13516478 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F11.2a.1 13507819 13516478 1

1 Sequence

Length
4891

1 Sequence Ontology Term

Identifier Name Description
transcript