WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51H1A.2a.1 Sequence Name  Y51H1A.2a.1
Length (nt)  3062   Chromosome Location  II: 13855788-13872241
Chromosome . Primary Identifier  II Chromosome Location . Start  13855788
Chromosome Location . End  13872241 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51H1A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013093 cup-14 Y51H1A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51H1A.2a Y51H1A.2a 2868   II: 13855982-13856125

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y51H1A.2a.1 13855788 13872241 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73879   338   II: 13855788-13856125 Caenorhabditis elegans
Exon73882   526   II: 13856828-13857353 Caenorhabditis elegans
Exon73888   386   II: 13858281-13858666 Caenorhabditis elegans
Exon73892   78   II: 13858721-13858798 Caenorhabditis elegans
Exon73898   131   II: 13862720-13862850 Caenorhabditis elegans
Exon73900   361   II: 13863730-13864090 Caenorhabditis elegans
Exon73902   440   II: 13865945-13866384 Caenorhabditis elegans
Exon73904   350   II: 13868082-13868431 Caenorhabditis elegans
Exon73906   176   II: 13869849-13870024 Caenorhabditis elegans
Exon73908   106   II: 13871299-13871404 Caenorhabditis elegans
Exon73911   152   II: 13871762-13871913 Caenorhabditis elegans
Exon73912   18   II: 13872224-13872241 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y51H1A.2a.1 13855788 13872241 -1

1 Sequence

Length
3062

1 Sequence Ontology Term

Identifier Name Description
transcript