WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39G8C.1.1 Sequence Name  Y39G8C.1.1
Length (nt)  5851   Chromosome Location  II: 14068907-14089877
Chromosome . Primary Identifier  II Chromosome Location . Start  14068907
Chromosome Location . End  14089877 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G8C.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012730 xrn-1 Y39G8C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39G8C.1 Y39G8C.1 4776   II: 14068997-14069203

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39G8C.1.1 14068907 14089877 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon74153   297   II: 14068907-14069203 Caenorhabditis elegans
Exon74154   101   II: 14070137-14070237 Caenorhabditis elegans
Exon74155   208   II: 14070655-14070862 Caenorhabditis elegans
Exon74156   309   II: 14072899-14073207 Caenorhabditis elegans
Exon74157   507   II: 14074680-14075186 Caenorhabditis elegans
Exon74165   906   II: 14077579-14078484 Caenorhabditis elegans
Exon74166   432   II: 14079788-14080219 Caenorhabditis elegans
Exon74168   154   II: 14081005-14081158 Caenorhabditis elegans
Exon74169   758   II: 14082694-14083451 Caenorhabditis elegans
Exon74170   189   II: 14085306-14085494 Caenorhabditis elegans
Exon74171   710   II: 14086653-14087362 Caenorhabditis elegans
Exon74172   1280   II: 14088598-14089877 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39G8C.1.1 14068907 14089877 1

1 Sequence

Length
5851

1 Sequence Ontology Term

Identifier Name Description
transcript