WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39G8C.1 Sequence Name  Y39G8C.1
Length (nt)  4776   Chromosome Location  II: 14068997-14069203
Chromosome . Primary Identifier  II Chromosome Location . Start  14068997
Chromosome Location . End  14069203
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G8C.1

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42924 XRN-1 180.1 1591 Caenorhabditis elegans
 

Other

24 RNAi

WormBase ID
WBRNAi00020423
WBRNAi00020425
WBRNAi00094391
WBRNAi00062925
WBRNAi00062926
WBRNAi00112357
WBRNAi00093853
WBRNAi00111701
WBRNAi00081962
WBRNAi00056289
WBRNAi00062923
WBRNAi00002345
WBRNAi00062922
WBRNAi00062924
WBRNAi00082158
WBRNAi00112353
WBRNAi00086057
WBRNAi00086056
WBRNAi00086059
WBRNAi00086061
WBRNAi00086063
WBRNAi00086065
WBRNAi00086067
WBRNAi00094539

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39G8C.1 14068997 14069203 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012730 xrn-1 Y39G8C.1 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39G8C.1 14068997 14069203 1
CDS:Y39G8C.1 14070137 14070237 1
CDS:Y39G8C.1 14070655 14070862 1
CDS:Y39G8C.1 14072899 14073207 1
CDS:Y39G8C.1 14074680 14075186 1
CDS:Y39G8C.1 14077579 14078484 1
CDS:Y39G8C.1 14079788 14080219 1
CDS:Y39G8C.1 14081005 14081158 1
CDS:Y39G8C.1 14082694 14083451 1
CDS:Y39G8C.1 14085306 14085494 1
CDS:Y39G8C.1 14086653 14087362 1
CDS:Y39G8C.1 14088598 14088892 1

1 Sequence

Length
4776

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39G8C.1.1 Y39G8C.1.1 5851   II: 14068907-14089877