WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005266 Gene Name  srh-43
Sequence Name  ? Y54G11A.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 and ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  II :22.9009 ±0.00024 Length (nt)  ? 1180
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005266

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

29 Allele

Public Name
gk963801
gk963053
gk962684
WBVar01696399
gk823258
gk366737
gk896667
gk434971
gk434970
gk767091
gk444441
gk714707
gk459840
gk333234
gk403430
gk891040
gk784573
gk746805
gk466063
WBVar02124400
gk964271
WBVar02079504
gk964025
gk161603
WBVar01767481
WBVar01442220
WBVar00014313
WBVar01319847
WBVar01319846

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005266 14289696 14290875 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_14290876..14292818   1943 II: 14290876-14292818 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005266 14289696 14290875 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1180

1 Sequence Ontology Term