WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38C6.2a.1 Sequence Name  C38C6.2a.1
Length (nt)  2230   Chromosome Location  II: 14640098-14644083
Chromosome . Primary Identifier  II Chromosome Location . Start  14640098
Chromosome Location . End  14644083 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38C6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000225 atgp-2 C38C6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38C6.2a C38C6.2a 1944   II: 14640375-14640491

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38C6.2a.1 14640098 14644083 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon75394   394   II: 14640098-14640491 Caenorhabditis elegans
Exon75397   90   II: 14640629-14640718 Caenorhabditis elegans
Exon75401   435   II: 14640774-14641208 Caenorhabditis elegans
Exon75405   107   II: 14641898-14642004 Caenorhabditis elegans
Exon75407   113   II: 14642053-14642165 Caenorhabditis elegans
Exon75409   244   II: 14642210-14642453 Caenorhabditis elegans
Exon75411   186   II: 14642501-14642686 Caenorhabditis elegans
Exon75413   362   II: 14642733-14643094 Caenorhabditis elegans
Exon75416   240   II: 14643502-14643741 Caenorhabditis elegans
Exon75417   59   II: 14644025-14644083 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38C6.2a.1 14640098 14644083 -1

1 Sequence

Length
2230

1 Sequence Ontology Term

Identifier Name Description
transcript