WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C38C6.2a Sequence Name  C38C6.2a
Length (nt)  1944   Chromosome Location  II: 14640375-14640491
Chromosome . Primary Identifier  II Chromosome Location . Start  14640375
Chromosome Location . End  14640491
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38C6.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31162 ATGP-2, isoform a 73.4 647 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00042147
WBRNAi00011749
WBRNAi00029658
WBRNAi00103211

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C38C6.2a 14640375 14640491 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000225 atgp-2 C38C6.2 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:C38C6.2a 14640375 14640491 -1
CDS:C38C6.2a 14640629 14640718 -1
CDS:C38C6.2a 14640774 14641208 -1
CDS:C38C6.2a 14641898 14642004 -1
CDS:C38C6.2a 14642053 14642165 -1
CDS:C38C6.2a 14642210 14642453 -1
CDS:C38C6.2a 14642501 14642686 -1
CDS:C38C6.2a 14642733 14643094 -1
CDS:C38C6.2a 14643502 14643741 -1
CDS:C38C6.2a 14644025 14644074 -1

1 Sequence

Length
1944

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C38C6.2a.1 C38C6.2a.1 2230   II: 14640098-14644083