WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38C6.2a.1 Sequence Name  C38C6.2a.1
Length (nt)  2230   Chromosome Location  II: 14640098-14644083
Chromosome . Primary Identifier  II Chromosome Location . Start  14640098
Chromosome Location . End  14644083 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38C6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000225 atgp-2 C38C6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38C6.2a C38C6.2a 1944   II: 14640375-14640491

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38C6.2a.1 14640098 14644083 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon75431   394   II: 14640098-14640491 Caenorhabditis elegans
Exon75434   90   II: 14640629-14640718 Caenorhabditis elegans
Exon75438   435   II: 14640774-14641208 Caenorhabditis elegans
Exon75442   107   II: 14641898-14642004 Caenorhabditis elegans
Exon75444   113   II: 14642053-14642165 Caenorhabditis elegans
Exon75446   244   II: 14642210-14642453 Caenorhabditis elegans
Exon75448   186   II: 14642501-14642686 Caenorhabditis elegans
Exon75450   362   II: 14642733-14643094 Caenorhabditis elegans
Exon75453   240   II: 14643502-14643741 Caenorhabditis elegans
Exon75454   59   II: 14644025-14644083 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38C6.2a.1 14640098 14644083 -1

1 Sequence

Length
2230

1 Sequence Ontology Term

Identifier Name Description
transcript