WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53F4B.20.1 Sequence Name  Y53F4B.20.1
Length (nt)  2142   Chromosome Location  II: 15084470-15089549
Chromosome . Primary Identifier  II Chromosome Location . Start  15084470
Chromosome Location . End  15089549 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53F4B.20.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013166 Y53F4B.20 Y53F4B.20 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53F4B.20 Y53F4B.20 2085   II: 15084476-15084628

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53F4B.20.1 15084470 15089549 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon76485   159   II: 15084470-15084628 Caenorhabditis elegans
Exon76486   123   II: 15084683-15084805 Caenorhabditis elegans
Exon76487   194   II: 15084864-15085057 Caenorhabditis elegans
Exon76488   190   II: 15085125-15085314 Caenorhabditis elegans
Exon76489   78   II: 15085967-15086044 Caenorhabditis elegans
Exon76490   116   II: 15086528-15086643 Caenorhabditis elegans
Exon76491   101   II: 15086685-15086785 Caenorhabditis elegans
Exon76493   200   II: 15086922-15087121 Caenorhabditis elegans
Exon76495   258   II: 15087858-15088115 Caenorhabditis elegans
Exon76496   109   II: 15088209-15088317 Caenorhabditis elegans
Exon76497   279   II: 15088856-15089134 Caenorhabditis elegans
Exon76498   335   II: 15089215-15089549 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53F4B.20.1 15084470 15089549 1

1 Sequence

Length
2142

1 Sequence Ontology Term

Identifier Name Description
transcript