WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54C4.3.1 Sequence Name  F54C4.3.1
Length (nt)  4390   Chromosome Location  III: 69850-86384
Chromosome . Primary Identifier  III Chromosome Location . Start  69850
Chromosome Location . End  86384 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54C4.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018794 attf-3 F54C4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C4.3 F54C4.3 3705   III: 70528-70695

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54C4.3.1 69850 86384 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon76913   846   III: 69850-70695 Caenorhabditis elegans
Exon76914   378   III: 72046-72423 Caenorhabditis elegans
Exon76915   318   III: 73595-73912 Caenorhabditis elegans
Exon76916   267   III: 74809-75075 Caenorhabditis elegans
Exon76917   413   III: 76673-77085 Caenorhabditis elegans
Exon76919   203   III: 78274-78476 Caenorhabditis elegans
Exon76920   146   III: 79966-80111 Caenorhabditis elegans
Exon76921   251   III: 80617-80867 Caenorhabditis elegans
Exon76923   96   III: 81425-81520 Caenorhabditis elegans
Exon76924   182   III: 81874-82055 Caenorhabditis elegans
Exon76926   149   III: 83144-83292 Caenorhabditis elegans
Exon76927   129   III: 83430-83558 Caenorhabditis elegans
Exon76930   193   III: 84206-84398 Caenorhabditis elegans
Exon76931   117   III: 84655-84771 Caenorhabditis elegans
Exon76932   194   III: 84972-85165 Caenorhabditis elegans
Exon76933   209   III: 85769-85977 Caenorhabditis elegans
Exon76934   121   III: 86027-86147 Caenorhabditis elegans
Exon76935   178   III: 86207-86384 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54C4.3.1 69850 86384 -1

1 Sequence

Length
4390

1 Sequence Ontology Term

Identifier Name Description
transcript