WormMine: Gene WBGene00195034

• WormBase Gene ID: WBGene00195034
• Gene Name: F40G9.20
• Sequence Name: F40G9.20
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including hsf-1; srbc-48; and xpf-1 based on RNA-seq studies. Is affected by Cadmium Chloride based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 20

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195034

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F40G9.20	F40G9.20	20	III: 178876-178895

Other

0 CDSs

0 RNAi Result

5 Allele

• gk962532
• gk964281
• WBVar02122373
• WBVar02124464
• WBVar02121155

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195034
• Start: 178876
• End: 178895
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_178896..179541
• Length (nt): 646
• Chromosome Location: III: 178896-179541
• Organism: Caenorhabditis elegans

24 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Heat shock: 35C for 1 hour.	Transcripts that showed significantly increased expression immediately after 1-day post L4 adult hermaphrodite endu-2(tm4977) animals were exposed to 35C for 1 hour.	The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01.	WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
	Transcripts that showed significantly increased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.	DESeq2, FDR <0.05, fold change > 2.	WBPaper00059664:srbc-48(ac23)_upregulated
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage.	Transcripts that showed significantly increased expression in whole animal at lin-15(n765ts); oyIs95 animals shifted from 20C to 25C for 16 hours at L4 larva stage, comparing to animals shifted from 20C to 15C for 16 hours at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
	Transcripts that showed significantly increased expression in xpf-1(tm2842) comparing to in N2 animals.	DESeq2 1.14.1, fold change > 2, FDR < 0.01.	WBPaper00062497:xpf-1(tm2842)_upregulated
	Transcripts that showed significantly decreased expression in hda-2(ok1479) comparing to in N2 animals.	DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2.	WBPaper00062159:hda-2(ok1479)_downregulated
	Transcripts that showed significantly decreased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals.	Fold change > 2, FDR < 0.01.	WBPaper00065993:glp-1(e2141)_downregulated
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure.	Small RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours.	DESeq2, FDR < 0.05	WBPaper00056868:P.aeruginosa_upregulated_smallRNA
	Transcripts that showed significantly increased expression after treated with 300uM CdCl2 from L1 to late L3 larva stage, in N2 animals injected with empty RNAi vector.	DESeq2, v1.12.0, fold change > 2, FDR < 0.05	WBPaper00057068:Cadmium_upregulated
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage.	Transcripts that showed significantly increased expression in AFD neurons at lin-15(n765ts); oyIs95 animals shifted from 20C to 25C for 16 hours at L4 larva stage, comparing to animals shifted from 20C to 15C for 16 hours at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00065158:25C_vs_15C_upregulated_AFD
	Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. Cluster 4 genes increased expression transiently during dauer commitment.	Benjamini Hochberg corrected q-value < 0.01.	WBPaper00053388:dauer_regulated_Cluster4
	Transcripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in daf-1(m40) at 1-day post L4 adult hermaphrodite animals.	CuffDiff fold change >= 2, q < 0.05.	WBPaper00059421:daf-3(mgDf90)_downregulated
	Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals.	DESeq2, fold change > 4, FDR < 0.05.	WBPaper00064661:lpd-3(ok2138)_upregulated
	Transcripts that showed significantly decreased expression in hsf-1(RNAi) comparing to in wild type animals injected with vector.	Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed.	WBPaper00066232:hsf-1(RNAi)_downregulated_WT
	Transcripts the showed altered expression after auxin induced sacy-1 depletion (24 hours of 2mM auxin treatment at 20C starting from young adult hermaphrodite stage).	DESeq2	WBPaper00059334:sacy-1(depletion)_regulated
	Transcripts that showed significantly increased expression in lin-53(RNAi) embryos comparing to control animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00067044:lin-53(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in daf-1(m40);daf-3(mgDf90) comparing to in N2 at 1-day post L4 adult hermaphrodite animals.	CuffDiff fold change >= 2, q < 0.05.	WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
Bacteria diet: heat-killed E. coli.	Transcripts that showed significantly increased expression in L1 animals exposed to heat-killed bacteria for 4 hours, comparing to animals exposed to no food.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00064403:Heat-killed-E.Coli_upregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Transcripts that showed significantly decreased expression in tdc-1(n3419);odIs77 comparing to in odIs77 control animals.	EdgeR, FDR<0.01	WBPaper00060921:tdc-1(n3419)_downregulated
	Transcripts that showed significantly increased expression in uaf-1(n4588) comparing to in N2 at embryo stage.	DEGSeq 1.18.0, p < 0.05, fold change > 2.	WBPaper00055364:uaf-1(n4588)_upregulated
Growth temperature	Transcripts that are significantly upregulated at 25C compared to both 15C and 20C, with no statistical difference between 15C and 20C, in worms feeding E. coli OP50.	DESeq2 and EdgeR, adjusted p-value < 0.05.	WBPaper00053814:25C_upregulated_OP50
Growth temperature	Transcripts that are significantly upregulated at 25C compared to both 15C and 20C, with no statistical difference between 15C and 20C, in worms feeding B. subtilis PY79.	DESeq2 and EdgeR, adjusted p-value < 0.05.	WBPaper00053814:25C_upregulated_PY79
Bacteria: S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50 24 hour exposure since L4 larva.	Transcripts in CB4856 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)	DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.	WBPaper00062684:pathogen_downregulated_CB4856

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195034
• Start: 178876
• End: 178895
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 20

1 Sequence Ontology Term