WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y50D7A.5.1 Sequence Name  Y50D7A.5.1
Length (nt)  596   Chromosome Location  III: 230429-235092
Chromosome . Primary Identifier  III Chromosome Location . Start  230429
Chromosome Location . End  235092 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021755 hpo-38 Y50D7A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.5 Y50D7A.5 531   III: 230435-230582

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.5.1 230429 235092 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77197   154   III: 230429-230582 Caenorhabditis elegans
Exon77198   89   III: 232032-232120 Caenorhabditis elegans
Exon77199   117   III: 232328-232444 Caenorhabditis elegans
Exon77200   62   III: 234713-234774 Caenorhabditis elegans
Exon77201   174   III: 234919-235092 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.5.1 230429 235092 1

1 Sequence

Length
596

1 Sequence Ontology Term

Identifier Name Description
transcript