WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55B1BM.1a.1 Sequence Name  Y55B1BM.1a.1
Length (nt)  1930   Chromosome Location  III: 408127-418738
Chromosome . Primary Identifier  III Chromosome Location . Start  408127
Chromosome Location . End  418738 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55B1BM.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021910 stim-1 Y55B1BM.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55B1BM.1a Y55B1BM.1a 1593   III: 408418-408574

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1BM.1a.1 408127 418738 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77471   448   III: 408127-408574 Caenorhabditis elegans
Exon77472   122   III: 408913-409034 Caenorhabditis elegans
Exon77474   83   III: 409914-409996 Caenorhabditis elegans
Exon77476   60   III: 410347-410406 Caenorhabditis elegans
Exon77478   98   III: 410548-410645 Caenorhabditis elegans
Exon77480   141   III: 411249-411389 Caenorhabditis elegans
Exon77483   180   III: 412091-412270 Caenorhabditis elegans
Exon77486   158   III: 413879-414036 Caenorhabditis elegans
Exon77489   243   III: 416948-417190 Caenorhabditis elegans
Exon77492   144   III: 417604-417747 Caenorhabditis elegans
Exon77496   125   III: 418089-418213 Caenorhabditis elegans
Exon77499   128   III: 418611-418738 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1BM.1a.1 408127 418738 -1

1 Sequence

Length
1930

1 Sequence Ontology Term

Identifier Name Description
transcript