WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55B1AL.3b.1 Sequence Name  Y55B1AL.3b.1
Length (nt)  3957   Chromosome Location  III: 577694-587109
Chromosome . Primary Identifier  III Chromosome Location . Start  577694
Chromosome Location . End  587109 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55B1AL.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021905 helq-1 Y55B1AL.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55B1AL.3b Y55B1AL.3b 1410   III: 577847-578017

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1AL.3b.1 577694 587109 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77709   324   III: 577694-578017 Caenorhabditis elegans
Exon77712   162   III: 578065-578226 Caenorhabditis elegans
Exon77716   267   III: 579327-579593 Caenorhabditis elegans
Exon77720   236   III: 579653-579888 Caenorhabditis elegans
Exon77724   475   III: 580519-580993 Caenorhabditis elegans
Exon77728   175   III: 583893-584067 Caenorhabditis elegans
Exon77733   137   III: 584117-584253 Caenorhabditis elegans
Exon77736   93   III: 584303-584395 Caenorhabditis elegans
Exon77739   369   III: 584494-584862 Caenorhabditis elegans
Exon77742   179   III: 585335-585513 Caenorhabditis elegans
Exon77745   1540   III: 585570-587109 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1AL.3b.1 577694 587109 -1

1 Sequence

Length
3957

1 Sequence Ontology Term

Identifier Name Description
transcript