WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y55B1AL.3b Sequence Name  Y55B1AL.3b
Length (nt)  1410   Chromosome Location  III: 577847-578017
Chromosome . Primary Identifier  III Chromosome Location . Start  577847
Chromosome Location . End  578017
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55B1AL.3b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE37439 HELQ-1, isoform b 52.3 469 Caenorhabditis elegans
 

Other

12 RNAi

WormBase ID
WBRNAi00001108
WBRNAi00099868
WBRNAi00100882
WBRNAi00099262
WBRNAi00099666
WBRNAi00099464
WBRNAi00075520
WBRNAi00100134
WBRNAi00100508
WBRNAi00100321
WBRNAi00100695
WBRNAi00101069

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y55B1AL.3b 577847 578017 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021905 helq-1 Y55B1AL.3 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y55B1AL.3b 577847 578017 -1
CDS:Y55B1AL.3b 578065 578226 -1
CDS:Y55B1AL.3b 579327 579593 -1
CDS:Y55B1AL.3b 579653 579888 -1
CDS:Y55B1AL.3b 580519 580993 -1
CDS:Y55B1AL.3b 583893 583991 -1

1 Sequence

Length
1410

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y55B1AL.3b.2 Y55B1AL.3b.2 2990   III: 577693-587105
Transcript:Y55B1AL.3b.1 Y55B1AL.3b.1 3957   III: 577694-587109
Transcript:Y55B1AL.3b.3 Y55B1AL.3b.3 1570   III: 577847-584195