WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T19C3.1.1 Sequence Name  T19C3.1.1
Length (nt)  1543   Chromosome Location  III: 606925-609649
Chromosome . Primary Identifier  III Chromosome Location . Start  606925
Chromosome Location . End  609649 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T19C3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020559 best-17 T19C3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T19C3.1 T19C3.1 1446   III: 606991-607044

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T19C3.1.1 606925 609649 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77797   120   III: 606925-607044 Caenorhabditis elegans
Exon77798   95   III: 607093-607187 Caenorhabditis elegans
Exon77799   138   III: 607240-607377 Caenorhabditis elegans
Exon77800   138   III: 607514-607651 Caenorhabditis elegans
Exon77801   73   III: 607696-607768 Caenorhabditis elegans
Exon77802   231   III: 608030-608260 Caenorhabditis elegans
Exon77803   78   III: 608302-608379 Caenorhabditis elegans
Exon77804   231   III: 608728-608958 Caenorhabditis elegans
Exon77805   229   III: 609012-609240 Caenorhabditis elegans
Exon77806   103   III: 609396-609498 Caenorhabditis elegans
Exon77807   107   III: 609543-609649 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T19C3.1.1 606925 609649 -1

1 Sequence

Length
1543

1 Sequence Ontology Term

Identifier Name Description
transcript