WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T17H7.4k.2 Sequence Name  T17H7.4k.2
Length (nt)  2408   Chromosome Location  III: 727208-743317
Chromosome . Primary Identifier  III Chromosome Location . Start  727208
Chromosome Location . End  743317 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T17H7.4k.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003936 pat-12 T17H7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T17H7.4k T17H7.4k 1974   III: 727639-727705

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T17H7.4k.2 727208 743317 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77969   498   III: 727208-727705 Caenorhabditis elegans
Exon77991   117   III: 727948-728064 Caenorhabditis elegans
Exon78004   310   III: 728117-728426 Caenorhabditis elegans
Exon78021   163   III: 728882-729044 Caenorhabditis elegans
Exon78036   101   III: 729093-729193 Caenorhabditis elegans
Exon78057   106   III: 729580-729685 Caenorhabditis elegans
Exon78072   159   III: 729986-730144 Caenorhabditis elegans
Exon78084   93   III: 730592-730684 Caenorhabditis elegans
Exon78096   87   III: 731532-731618 Caenorhabditis elegans
Exon78106   129   III: 731676-731804 Caenorhabditis elegans
Exon78122   21   III: 731906-731926 Caenorhabditis elegans
Exon78193   21   III: 739327-739347 Caenorhabditis elegans
Exon78201   99   III: 739660-739758 Caenorhabditis elegans
Exon78209   99   III: 739808-739906 Caenorhabditis elegans
Exon78217   135   III: 739955-740089 Caenorhabditis elegans
Exon78228   198   III: 742985-743182 Caenorhabditis elegans
Exon78229   72   III: 743246-743317 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T17H7.4k.2 727208 743317 -1

1 Sequence

Length
2408

1 Sequence Ontology Term

Identifier Name Description
transcript