WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T17H7.4k.1 Sequence Name  T17H7.4k.1
Length (nt)  2434   Chromosome Location  III: 727208-743343
Chromosome . Primary Identifier  III Chromosome Location . Start  727208
Chromosome Location . End  743343 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T17H7.4k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003936 pat-12 T17H7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T17H7.4k T17H7.4k 1974   III: 727639-727705

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T17H7.4k.1 727208 743343 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77970   498   III: 727208-727705 Caenorhabditis elegans
Exon77990   117   III: 727948-728064 Caenorhabditis elegans
Exon78003   310   III: 728117-728426 Caenorhabditis elegans
Exon78020   163   III: 728882-729044 Caenorhabditis elegans
Exon78035   101   III: 729093-729193 Caenorhabditis elegans
Exon78056   106   III: 729580-729685 Caenorhabditis elegans
Exon78071   159   III: 729986-730144 Caenorhabditis elegans
Exon78083   93   III: 730592-730684 Caenorhabditis elegans
Exon78095   87   III: 731532-731618 Caenorhabditis elegans
Exon78105   129   III: 731676-731804 Caenorhabditis elegans
Exon78121   21   III: 731906-731926 Caenorhabditis elegans
Exon78192   21   III: 739327-739347 Caenorhabditis elegans
Exon78200   99   III: 739660-739758 Caenorhabditis elegans
Exon78208   99   III: 739808-739906 Caenorhabditis elegans
Exon78216   135   III: 739955-740089 Caenorhabditis elegans
Exon78227   198   III: 742985-743182 Caenorhabditis elegans
Exon78230   98   III: 743246-743343 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T17H7.4k.1 727208 743343 -1

1 Sequence

Length
2434

1 Sequence Ontology Term

Identifier Name Description
transcript