WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53A3.4b.1 Sequence Name  F53A3.4b.1
Length (nt)  6389   Chromosome Location  III: 1905967-1939569
Chromosome . Primary Identifier  III Chromosome Location . Start  1905967
Chromosome Location . End  1939569 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53A3.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004128 pqn-41 F53A3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53A3.4b F53A3.4b 6150   III: 1905967-1906011

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53A3.4b.1 1905967 1939569 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80383   45   III: 1905967-1906011 Caenorhabditis elegans
Exon80385   208   III: 1906060-1906267 Caenorhabditis elegans
Exon80388   582   III: 1906341-1906922 Caenorhabditis elegans
Exon80391   197   III: 1907802-1907998 Caenorhabditis elegans
Exon80394   135   III: 1908187-1908321 Caenorhabditis elegans
Exon80397   159   III: 1909285-1909443 Caenorhabditis elegans
Exon80400   252   III: 1910279-1910530 Caenorhabditis elegans
Exon80403   192   III: 1911127-1911318 Caenorhabditis elegans
Exon80406   207   III: 1912917-1913123 Caenorhabditis elegans
Exon80409   259   III: 1914173-1914431 Caenorhabditis elegans
Exon80412   161   III: 1915463-1915623 Caenorhabditis elegans
Exon80415   488   III: 1915729-1916216 Caenorhabditis elegans
Exon80418   244   III: 1916946-1917189 Caenorhabditis elegans
Exon80421   66   III: 1917239-1917304 Caenorhabditis elegans
Exon80431   273   III: 1927677-1927949 Caenorhabditis elegans
Exon80435   368   III: 1929106-1929473 Caenorhabditis elegans
Exon80442   550   III: 1930738-1931287 Caenorhabditis elegans
Exon80448   413   III: 1931962-1932374 Caenorhabditis elegans
Exon80452   105   III: 1933198-1933302 Caenorhabditis elegans
Exon80457   340   III: 1934184-1934523 Caenorhabditis elegans
Exon80463   174   III: 1936367-1936540 Caenorhabditis elegans
Exon80468   420   III: 1937681-1938100 Caenorhabditis elegans
Exon80475   551   III: 1939019-1939569 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53A3.4b.1 1905967 1939569 1

1 Sequence

Length
6389

1 Sequence Ontology Term

Identifier Name Description
transcript