WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53A3.4d.1 Sequence Name  F53A3.4d.1
Length (nt)  3523   Chromosome Location  III: 1919571-1939568
Chromosome . Primary Identifier  III Chromosome Location . Start  1919571
Chromosome Location . End  1939568 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53A3.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004128 pqn-41 F53A3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53A3.4d F53A3.4d 1284   III: 1933265-1933302

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53A3.4d.1 1919571 1939568 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80387   330   III: 1919571-1919900 Caenorhabditis elegans
Exon80396   273   III: 1927677-1927949 Caenorhabditis elegans
Exon80400   368   III: 1929106-1929473 Caenorhabditis elegans
Exon80406   550   III: 1930738-1931287 Caenorhabditis elegans
Exon80412   413   III: 1931962-1932374 Caenorhabditis elegans
Exon80416   105   III: 1933198-1933302 Caenorhabditis elegans
Exon80421   340   III: 1934184-1934523 Caenorhabditis elegans
Exon80427   174   III: 1936367-1936540 Caenorhabditis elegans
Exon80432   420   III: 1937681-1938100 Caenorhabditis elegans
Exon80436   550   III: 1939019-1939568 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53A3.4d.1 1919571 1939568 1

1 Sequence

Length
3523

1 Sequence Ontology Term

Identifier Name Description
transcript