WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3B.5f.1 Sequence Name  Y39A3B.5f.1
Length (nt)  1395   Chromosome Location  III: 2009481-2016019
Chromosome . Primary Identifier  III Chromosome Location . Start  2009481
Chromosome Location . End  2016019 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3B.5f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021439 ckr-2 Y39A3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3B.5f Y39A3B.5f 1395   III: 2009481-2009543

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5f.1 2009481 2016019 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80578   63   III: 2009481-2009543 Caenorhabditis elegans
Exon80584   109   III: 2010635-2010743 Caenorhabditis elegans
Exon80588   68   III: 2011044-2011111 Caenorhabditis elegans
Exon80593   171   III: 2011261-2011431 Caenorhabditis elegans
Exon80598   91   III: 2012422-2012512 Caenorhabditis elegans
Exon80603   117   III: 2012569-2012685 Caenorhabditis elegans
Exon80608   88   III: 2012738-2012825 Caenorhabditis elegans
Exon80613   142   III: 2013701-2013842 Caenorhabditis elegans
Exon80618   151   III: 2014558-2014708 Caenorhabditis elegans
Exon80623   100   III: 2015131-2015230 Caenorhabditis elegans
Exon80628   160   III: 2015451-2015610 Caenorhabditis elegans
Exon80629   135   III: 2015885-2016019 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3B.5f.1 2009481 2016019 -1

1 Sequence

Length
1395

1 Sequence Ontology Term

Identifier Name Description
transcript