WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y39A3B.5f Sequence Name  Y39A3B.5f
Length (nt)  1395   Chromosome Location  III: 2009481-2009543
Chromosome . Primary Identifier  III Chromosome Location . Start  2009481
Chromosome Location . End  2009543
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3B.5f

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE48324 CKR-2, isoform f 52.6 464 Caenorhabditis elegans
 

Other

13 RNAi

WormBase ID
WBRNAi00066487
WBRNAi00066486
WBRNAi00066489
WBRNAi00066488
WBRNAi00056141
WBRNAi00017098
WBRNAi00020358
WBRNAi00006625
WBRNAi00036900
WBRNAi00082003
WBRNAi00082005
WBRNAi00082004
WBRNAi00082006

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y39A3B.5f 2009481 2009543 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021439 ckr-2 Y39A3B.5 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y39A3B.5f 2009481 2009543 -1
CDS:Y39A3B.5f 2010635 2010743 -1
CDS:Y39A3B.5f 2011044 2011111 -1
CDS:Y39A3B.5f 2011261 2011431 -1
CDS:Y39A3B.5f 2012422 2012512 -1
CDS:Y39A3B.5f 2012569 2012685 -1
CDS:Y39A3B.5f 2012738 2012825 -1
CDS:Y39A3B.5f 2013701 2013842 -1
CDS:Y39A3B.5f 2014558 2014708 -1
CDS:Y39A3B.5f 2015131 2015230 -1
CDS:Y39A3B.5f 2015451 2015610 -1
CDS:Y39A3B.5f 2015885 2016019 -1

1 Sequence

Length
1395

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y39A3B.5f.1 Y39A3B.5f.1 1395   III: 2009481-2016019