WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G9A.4b.1 Sequence Name  Y48G9A.4b.1
Length (nt)  3950   Chromosome Location  III: 2124137-2151553
Chromosome . Primary Identifier  III Chromosome Location . Start  2124137
Chromosome Location . End  2151553 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G9A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021698 frl-1 Y48G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G9A.4b Y48G9A.4b 3603   III: 2124142-2124229

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.4b.1 2124137 2151553 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80767   93   III: 2124137-2124229 Caenorhabditis elegans
Exon80768   72   III: 2134475-2134546 Caenorhabditis elegans
Exon80769   170   III: 2134651-2134820 Caenorhabditis elegans
Exon80772   254   III: 2136412-2136665 Caenorhabditis elegans
Exon80774   281   III: 2137304-2137584 Caenorhabditis elegans
Exon80776   181   III: 2138320-2138500 Caenorhabditis elegans
Exon80781   241   III: 2140092-2140332 Caenorhabditis elegans
Exon80783   421   III: 2141364-2141784 Caenorhabditis elegans
Exon80785   260   III: 2143530-2143789 Caenorhabditis elegans
Exon80787   415   III: 2145622-2146036 Caenorhabditis elegans
Exon80789   539   III: 2147433-2147971 Caenorhabditis elegans
Exon80791   357   III: 2148883-2149239 Caenorhabditis elegans
Exon80793   187   III: 2150155-2150341 Caenorhabditis elegans
Exon80794   479   III: 2151075-2151553 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G9A.4b.1 2124137 2151553 1

1 Sequence

Length
3950

1 Sequence Ontology Term

Identifier Name Description
transcript