WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10BM.3.1 Sequence Name  Y54F10BM.3.1
Length (nt)  2046   Chromosome Location  III: 2282025-2289992
Chromosome . Primary Identifier  III Chromosome Location . Start  2282025
Chromosome Location . End  2289992 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10BM.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021858 Y54F10BM.3 Y54F10BM.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10BM.3 Y54F10BM.3 1869   III: 2282086-2282158

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.3.1 2282025 2289992 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80965   134   III: 2282025-2282158 Caenorhabditis elegans
Exon80966   52   III: 2283095-2283146 Caenorhabditis elegans
Exon80967   75   III: 2283199-2283273 Caenorhabditis elegans
Exon80968   295   III: 2283797-2284091 Caenorhabditis elegans
Exon80969   154   III: 2284231-2284384 Caenorhabditis elegans
Exon80970   199   III: 2285234-2285432 Caenorhabditis elegans
Exon80971   266   III: 2285998-2286263 Caenorhabditis elegans
Exon80972   254   III: 2287583-2287836 Caenorhabditis elegans
Exon80973   207   III: 2288348-2288554 Caenorhabditis elegans
Exon80974   255   III: 2288999-2289253 Caenorhabditis elegans
Exon80975   155   III: 2289838-2289992 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.3.1 2282025 2289992 1

1 Sequence

Length
2046

1 Sequence Ontology Term

Identifier Name Description
transcript