WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W04B5.3a.1 Sequence Name  W04B5.3a.1
Length (nt)  1380   Chromosome Location  III: 2418617-2423912
Chromosome . Primary Identifier  III Chromosome Location . Start  2418617
Chromosome Location . End  2423912 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W04B5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021020 W04B5.3 W04B5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W04B5.3a W04B5.3a 1281   III: 2418663-2418683

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W04B5.3a.1 2418617 2423912 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81204   67   III: 2418617-2418683 Caenorhabditis elegans
Exon81206   168   III: 2419136-2419303 Caenorhabditis elegans
Exon81209   117   III: 2419625-2419741 Caenorhabditis elegans
Exon81212   66   III: 2419949-2420014 Caenorhabditis elegans
Exon81215   58   III: 2420062-2420119 Caenorhabditis elegans
Exon81218   164   III: 2420429-2420592 Caenorhabditis elegans
Exon81221   237   III: 2421306-2421542 Caenorhabditis elegans
Exon81224   72   III: 2421672-2421743 Caenorhabditis elegans
Exon81227   150   III: 2422451-2422600 Caenorhabditis elegans
Exon81230   142   III: 2422954-2423095 Caenorhabditis elegans
Exon81232   62   III: 2423727-2423788 Caenorhabditis elegans
Exon81236   77   III: 2423836-2423912 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W04B5.3a.1 2418617 2423912 1

1 Sequence

Length
1380

1 Sequence Ontology Term

Identifier Name Description
transcript