WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53G8AM.5.1 Sequence Name  Y53G8AM.5.1
Length (nt)  742   Chromosome Location  III: 3256689-3258406
Chromosome . Primary Identifier  III Chromosome Location . Start  3256689
Chromosome Location . End  3258406 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53G8AM.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021805 nspg-7.2 Y53G8AM.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53G8AM.5 Y53G8AM.5 690   III: 3256730-3256813

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53G8AM.5.1 3256689 3258406 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82662   125   III: 3256689-3256813 Caenorhabditis elegans
Exon82663   61   III: 3256865-3256925 Caenorhabditis elegans
Exon82664   106   III: 3256975-3257080 Caenorhabditis elegans
Exon82665   60   III: 3257134-3257193 Caenorhabditis elegans
Exon82666   98   III: 3257249-3257346 Caenorhabditis elegans
Exon82667   292   III: 3258115-3258406 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53G8AM.5.1 3256689 3258406 -1

1 Sequence

Length
742

1 Sequence Ontology Term

Identifier Name Description
transcript