WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D5.2a.1 Sequence Name  C48D5.2a.1
Length (nt)  3536   Chromosome Location  III: 3590722-3611971
Chromosome . Primary Identifier  III Chromosome Location . Start  3590722
Chromosome Location . End  3611971 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2a C48D5.2a 3081   III: 3590770-3590907

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2a.1 3590722 3611971 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon83392   186   III: 3590722-3590907 Caenorhabditis elegans
Exon83393   117   III: 3591624-3591740 Caenorhabditis elegans
Exon83394   217   III: 3591785-3592001 Caenorhabditis elegans
Exon83395   127   III: 3592397-3592523 Caenorhabditis elegans
Exon83396   247   III: 3592604-3592850 Caenorhabditis elegans
Exon83397   227   III: 3593165-3593391 Caenorhabditis elegans
Exon83398   114   III: 3594210-3594323 Caenorhabditis elegans
Exon83399   153   III: 3594440-3594592 Caenorhabditis elegans
Exon83402   103   III: 3604815-3604917 Caenorhabditis elegans
Exon83406   184   III: 3607049-3607232 Caenorhabditis elegans
Exon83409   188   III: 3607558-3607745 Caenorhabditis elegans
Exon83412   301   III: 3608124-3608424 Caenorhabditis elegans
Exon83415   229   III: 3608994-3609222 Caenorhabditis elegans
Exon83418   88   III: 3609685-3609772 Caenorhabditis elegans
Exon83421   276   III: 3609824-3610099 Caenorhabditis elegans
Exon83424   285   III: 3610561-3610845 Caenorhabditis elegans
Exon83428   494   III: 3611478-3611971 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D5.2a.1 3590722 3611971 1

1 Sequence

Length
3536

1 Sequence Ontology Term

Identifier Name Description
transcript