WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1e.2 Sequence Name  F13B10.1e.2
Length (nt)  3394   Chromosome Location  III: 3869591-3882726
Chromosome . Primary Identifier  III Chromosome Location . Start  3869591
Chromosome Location . End  3882726 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1e.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1e F13B10.1e 2406   III: 3870183-3870277

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1e.2 3869591 3882726 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84013   687   III: 3869591-3870277 Caenorhabditis elegans
Exon84028   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84041   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84054   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84064   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84074   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84084   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84094   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84104   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84108   95   III: 3882632-3882726 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1e.2 3869591 3882726 -1

1 Sequence

Length
3394

1 Sequence Ontology Term

Identifier Name Description
transcript