WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1d.1 Sequence Name  F13B10.1d.1
Length (nt)  3684   Chromosome Location  III: 3869592-3901625
Chromosome . Primary Identifier  III Chromosome Location . Start  3869592
Chromosome Location . End  3901625 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1d F13B10.1d 1032   III: 3870183-3870268

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1d.1 3869592 3901625 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84015   677   III: 3869592-3870268 Caenorhabditis elegans
Exon84024   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84038   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84051   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84061   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84071   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84081   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84091   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84101   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84115   107   III: 3890925-3891031 Caenorhabditis elegans
Exon84117   85   III: 3891370-3891454 Caenorhabditis elegans
Exon84119   203   III: 3901423-3901625 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1d.1 3869592 3901625 -1

1 Sequence

Length
3684

1 Sequence Ontology Term

Identifier Name Description
transcript