WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1d.2 Sequence Name  F13B10.1d.2
Length (nt)  3383   Chromosome Location  III: 3869593-3882726
Chromosome . Primary Identifier  III Chromosome Location . Start  3869593
Chromosome Location . End  3882726 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1d.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1d F13B10.1d 1032   III: 3870183-3870268

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1d.2 3869593 3882726 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84016   676   III: 3869593-3870268 Caenorhabditis elegans
Exon84025   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84039   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84052   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84062   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84072   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84082   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84092   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84102   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84107   95   III: 3882632-3882726 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1d.2 3869593 3882726 -1

1 Sequence

Length
3383

1 Sequence Ontology Term

Identifier Name Description
transcript