WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1f.1 Sequence Name  F13B10.1f.1
Length (nt)  2955   Chromosome Location  III: 3870183-3887608
Chromosome . Primary Identifier  III Chromosome Location . Start  3870183
Chromosome Location . End  3887608 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1f F13B10.1f 2955   III: 3870183-3870277

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1f.1 3870183 3887608 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84018   95   III: 3870183-3870277 Caenorhabditis elegans
Exon84030   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84043   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84056   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84066   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84076   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84086   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84095   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84105   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84109   248   III: 3887361-3887608 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1f.1 3870183 3887608 -1

1 Sequence

Length
2955

1 Sequence Ontology Term

Identifier Name Description
transcript