WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1c.1 Sequence Name  F13B10.1c.1
Length (nt)  3661   Chromosome Location  III: 3869590-3887730
Chromosome . Primary Identifier  III Chromosome Location . Start  3869590
Chromosome Location . End  3887730 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1c F13B10.1c 2946   III: 3870183-3870268

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1c.1 3869590 3887730 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84044   679   III: 3869590-3870268 Caenorhabditis elegans
Exon84060   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84074   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84087   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84097   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84107   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84117   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84127   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84137   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84147   370   III: 3887361-3887730 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1c.1 3869590 3887730 -1

1 Sequence

Length
3661

1 Sequence Ontology Term

Identifier Name Description
transcript