WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F43C1.1.1 Sequence Name  F43C1.1.1
Length (nt)  3428   Chromosome Location  III: 4209488-4216749
Chromosome . Primary Identifier  III Chromosome Location . Start  4209488
Chromosome Location . End  4216749 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F43C1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009647 phlp-2 F43C1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F43C1.1 F43C1.1 3381   III: 4209492-4209700

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F43C1.1.1 4209488 4216749 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84966   213   III: 4209488-4209700 Caenorhabditis elegans
Exon84967   308   III: 4210501-4210808 Caenorhabditis elegans
Exon84968   66   III: 4210926-4210991 Caenorhabditis elegans
Exon84969   233   III: 4211045-4211277 Caenorhabditis elegans
Exon84970   294   III: 4211637-4211930 Caenorhabditis elegans
Exon84971   225   III: 4211983-4212207 Caenorhabditis elegans
Exon84972   82   III: 4212631-4212712 Caenorhabditis elegans
Exon84973   157   III: 4212759-4212915 Caenorhabditis elegans
Exon84974   156   III: 4212969-4213124 Caenorhabditis elegans
Exon84975   79   III: 4213170-4213248 Caenorhabditis elegans
Exon84976   279   III: 4213798-4214076 Caenorhabditis elegans
Exon84977   230   III: 4214145-4214374 Caenorhabditis elegans
Exon84978   115   III: 4214595-4214709 Caenorhabditis elegans
Exon84979   76   III: 4214760-4214835 Caenorhabditis elegans
Exon84980   97   III: 4215042-4215138 Caenorhabditis elegans
Exon84981   298   III: 4215456-4215753 Caenorhabditis elegans
Exon84982   149   III: 4215898-4216046 Caenorhabditis elegans
Exon84983   371   III: 4216379-4216749 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F43C1.1.1 4209488 4216749 1

1 Sequence

Length
3428

1 Sequence Ontology Term

Identifier Name Description
transcript