WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M88.5e.1 Sequence Name  M88.5e.1
Length (nt)  3301   Chromosome Location  III: 4553617-4560431
Chromosome . Primary Identifier  III Chromosome Location . Start  4553617
Chromosome Location . End  4560431 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M88.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010908 imph-1 M88.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M88.5e M88.5e 1944   III: 4556251-4556511

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M88.5e.1 4553617 4560431 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86108   210   III: 4553617-4553826 Caenorhabditis elegans
Exon86113   172   III: 4554186-4554357 Caenorhabditis elegans
Exon86115   125   III: 4554566-4554690 Caenorhabditis elegans
Exon86125   366   III: 4556146-4556511 Caenorhabditis elegans
Exon86127   162   III: 4556847-4557008 Caenorhabditis elegans
Exon86137   263   III: 4557101-4557363 Caenorhabditis elegans
Exon86143   123   III: 4557415-4557537 Caenorhabditis elegans
Exon86145   175   III: 4557578-4557752 Caenorhabditis elegans
Exon86153   105   III: 4557797-4557901 Caenorhabditis elegans
Exon86159   312   III: 4557980-4558291 Caenorhabditis elegans
Exon86165   304   III: 4558612-4558915 Caenorhabditis elegans
Exon86171   183   III: 4559400-4559582 Caenorhabditis elegans
Exon86173   801   III: 4559631-4560431 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M88.5e.1 4553617 4560431 1

1 Sequence

Length
3301

1 Sequence Ontology Term

Identifier Name Description
transcript