WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M88.5a.1 Sequence Name  M88.5a.1
Length (nt)  3276   Chromosome Location  III: 4553618-4560438
Chromosome . Primary Identifier  III Chromosome Location . Start  4553618
Chromosome Location . End  4560438 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M88.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010908 imph-1 M88.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M88.5a M88.5a 2487   III: 4553713-4553826

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M88.5a.1 4553618 4560438 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86109   209   III: 4553618-4553826 Caenorhabditis elegans
Exon86111   172   III: 4554186-4554357 Caenorhabditis elegans
Exon86116   113   III: 4554578-4554690 Caenorhabditis elegans
Exon86121   366   III: 4556146-4556511 Caenorhabditis elegans
Exon86129   156   III: 4556853-4557008 Caenorhabditis elegans
Exon86133   263   III: 4557101-4557363 Caenorhabditis elegans
Exon86139   123   III: 4557415-4557537 Caenorhabditis elegans
Exon86147   169   III: 4557584-4557752 Caenorhabditis elegans
Exon86151   105   III: 4557797-4557901 Caenorhabditis elegans
Exon86157   312   III: 4557980-4558291 Caenorhabditis elegans
Exon86161   304   III: 4558612-4558915 Caenorhabditis elegans
Exon86167   183   III: 4559400-4559582 Caenorhabditis elegans
Exon86178   801   III: 4559638-4560438 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M88.5a.1 4553618 4560438 1

1 Sequence

Length
3276

1 Sequence Ontology Term

Identifier Name Description
transcript